Geneious Prime
Sequence Analysis Tools:
From Data to Discovery, Faster

Geneious Prime is packed with fundamental molecular biology tools that we’ve created with input from real scientists around the world. Geneious Prime’s molecular biology and NGS analysis tools include cloning, primer design, and de novo assembly, and can be customized with plugins and algorithms.

Geneious Prime is a powerful bioinformatics software solution packed with fundamental molecular biology and sequence analysis tools

Molecular Cloning & Primer Design

Perform a wide-range of cloning and primer design operations within one interface.

NGS Analysis and Genomics

Take charge with industry-leading assembly and mapping algorithms, and superior visualizations.

Shared Database

Manage and store data effectively and get teams collaborating efficiently.

Import and Export Data

Import, export and convert common file types as well as their annotations and notes.


Save time and ensure your work is repeatable by creating or using in-built workflows.

API and Plugin Development

Integrate crucial operations using Geneious Prime’s API and Plugin Development tools.
Features of  Geneious Prime 

NGS Analysis and Genomics

De novo assembly or reference mapping of Illumina, PacBio, or Nanopore reads (paired ends, barcodes) using industry leading algorithms, including SPAdes, TopHat and Minimap2.

Comprehensive analysis of data, including genome browser, contig visualization, SNP calling, and RNA-Seq expression analysis.

  • Sequence and Chromatogram Analysis

    Trim, assemble, and view Sanger sequencing trace files; correct base calls; and create consensus sequences. Automatic annotation for gene prediction, motifs, translation, and variant calling.

    Genotype microsatellite traces with automated ladder fitting and peak calling and generate tables of alleles.

    Alignment and Tree Building

    Perform pairwise and multiple alignments of DNA or protein using trusted algorithms, including MAFFT and ClustalW. View and edit alignments with real-time translation and highlighting.

    Build phylogenetic trees using peer-reviewed algorithms, including RAxML and PAUP*, and adjust display settings for publication-ready graphics.

    Molecular Cloning

    View plasmid maps, automatically annotate vectors, and copy-paste sequences with annotations. Find restriction sites; digest, ligate, and perform Golden Gate, Gibson, and Gateway cloning.

    Design primers, find CRISPR sites, and optimize codons. Track history and parent descendant lineage throughout cloning processes.

    Searching, Sharing and Automation

    Batch BLAST against NCBI and directly search GenBank. Centralize and collaborate on data with seamlessly integrated shared repositories. Import and export most industry standard file formats.

    Setup automated workflows to increase efficiency, control business processes, and reduce human error in your research.

    Geneious Server Database

    Synchronized storage location for Geneious data accessible by multiple concurrent users

    Greater level of control and increased security for data access for your organization over the standard shared database

    Configurable to utilize existing authentication infrastructure such as LDAP to secure your data and simplify account management

    Additional cost – please contact sales for further information

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